RNA turnover in bacteria, archaea, and organelles - Maquat, Lynne; Arraiano, Cecilia M. (Amsterdam Elsevier/Academic Press, 2008)
Section I. Bacteria. -- 1. Analysis of RNA decay, processing, and polyadenylation in Eschericia coli and othr prokaryotes / Bijoy K. Mohanty ... -- 2. Analyzing the decay of stable RNAs in E. coli / Zhongwei Li and Murray P. Deutscher -- 3. Genomic analysis of mRNA decay in E. coli with DNA microarrays / Pei-Hsun Lin ... -- 4. Co-immunopurification of multiprotein complexes containing RNA-degrading enzymes / Agamemnon J. Carpousis ... -- 5. PABLO analysis of RNA: 5'-phosphorylation state and 5'-end mapping / Helena Celesnik, Atilio Deana, Joel G. Belasco -- 6. Proteomic approach to the analysis of RNA degradosome composition in Eschericia coli / Periluigi Mauri, Gianni Dehò -- 7. New approaches to understanding double-stranded RNA processing by ribonuclease III: purification and assays of homodimeric and heterodimeric forms of RNase III from bacterial extremopholes and mesophiles / Wenzhao Meng ... -- 8. Characterizing ribonucleases In vitro: examples of synergies between biochemical and structural analysis / Cecília Maria Arraiano, Ana Barbas, Mónica Amblar -- 9. Role of RNA chaperone Hfq in poly(A) metabolism: methods to determine positions, abundance and lengths of short oligo (A) tails / Philippe Régnier, Eliane Hajnsdorf -- 10. Assaying DEAD-box RNA helicases and their role in mRNA degradation in Escherichia coli / Agamemnon J. Carpusis, Vanessa Khemici, Leonora Poljak 11. Preparation of the Escherichia coli RNase E protein and reconstitution of the RNA degradosome / George A. Mackie ... -- 12. Identifying and characterizing substrates of the RNase E/G family of enzymes / Louise Kime, Stefanie S. Jourdan, Kenneth J. McDowall -- 13. Construction and characterization of E. coli K12 strains in which the transcription of selected genes is desynchronized from translation / Florence Proux, Marc Dreyfus -- 14. Analysis of mRNA decay in Bacillus subtilis / David H. Bechhofer ... -- 15. Assay of Bacillus subtilis ribonucleases In vitro / Ciarán Condon ... -- 16. Staphylococcus aureus endoribonuclease III: purification and properties / Clément Chevalier ... -- 17. Studying tmRNA-mediated surveillance and nonstop mRNA decay / Thomas Sundermeier ... -- 18. Analysis of mRNA destabilization and translatinal inhibition mediated by Hfq-binding small RNAs / Teppei Morita ... -- Section II. Archaea. -- 19. In vivo and In vitro studies of RNA degrading activities in archaea / Elena Evguenieva-Hackenberg, Steffan Wagner, Gabriele Klug -- 20. Expression, reconstitution and structure of an archaeal RNA degrading exosome / Esben Lorentzen, Elena Conti -- Section III. Organelles. 21 Polyadenylation-mediated RNA degradation in plant mitochondria / Sarah Holec ... --22. In vivo and In vitro approaches for studying the yeast mitochondrial RNA degradosome complex / Michal Malecki ... -- 23. Measuring mRNA decay in human mitrochondria / Asuteka Nagao, Narumi Hino-Shigi, Tsutomu Suzuki -- 24. Detection and characterization of polyadenylated RNA in eukarya, bacteria, archaea, and organelles / Shimyn Slomovic, Victoria Portnoy, Gadi Schuster -- 25. RNA decay by Messenger RNA inferases / Mikkel Christenson-Dalsgaard ...
Includes bibliographical references and indexes.
Keywords: RNA -- Synthesis; Cell organelles -- Formation; RNA-protein interactions; Genetic regulation; Electronic books