Microbial metagenomics, metatranscriptomics, and metaproteomics - DeLong, Edward F. (Amsterdam Elsevier/Academic Press, 2013)
In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery / Mohamed F. Haroon, Connor T. Skennerton, Jason A. Steen, Nancy Lachner, Philip Hugenholtz, and Gene W. Tyson -- Whole cell immunomagnetic enrichment of environmental microbial consortia using rRNA-targeted magneto-FISH / Elizabeth Trembath-Reichert, Abigail Green-Saxena, and Victoria J. Orphan -- Coupling FACS and genomic methods for the characterization of uncultivated symbionts / Anne Thompson, Shellie Bench, Brandon Carter, and Jonathan Zehr -- Optofluidic cell selection from complex microbial communities for single-genome analysis / Zachary C. Landry, Stephen J. Giovanonni, Stephen R. Quake, and Paul C. Blainey -- Quantifying and identifying the active and damaged subsets of indigenous microbial communities / Corinne Ferrier Maurice and Peter James Turnbaugh -- Preparation of BAC libraries from marine microbial populations / Gazalah Sabehi and Oded Béjà -- Preparation of fosmid libraries and functional metagenomic analysis of microbial community DNA / Asunción Martínez and Marcia S. Osburne -- Preparation of metagenomic libraries from naturally occurring marine viruses / Sergei A. Solonenko and Matthew B. Sullivan -- Preparation and metatranscriptomic analyses of host-microbe systems / Jarrad T. Hampton-Marcell, Stephanie M. Moormann, Sarah M. Owens, and Jack A. Gilbert -- Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton / Frank J. Stewart -- Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample / Hugo Roume, Anna Heintz-Buschart, Emilie EL Muller, and Paul Wilmes -- Use of internal standards for quantitative metranscriptome and metagenome analysis / Brandon M. Satinsky, Scott M. Gilford, Byron C. Crump, and Mary Ann Moran -- Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities / Lilia C. Carvalhais and Peer M. Schenk -- Sample preparation and processing for planktonic microbial community proteomics / Robert M. Morris and Brook L. Nunn -- Sample handling and mass spectrometry for microbial metaproteomic analyses / Ryan S. Mueller and Chongle Pan -- Molecular tools for investigating mcirobial community structure and function in oxygen-deficient marine waters / Alyse K. Hawley, Sam Kheirandish, Andreas Mueller, Hilary T.C. Leung, Angela D. Norbeck, Heather M. Brewer, Ljiljana Pasa-Tolic, and Steven J. Hallam -- Assembling full-length rRNA genes from short-read metagenomic sequence datasets using EMIRGE / Christopher S. Miller -- Computational methods for high-throughput comparative analyses of natural microbial communities / Sarah P. Preheim, Allison R. Perrotta, Jonathan Friedman, Chris Smilie, Ilana Brito, Mark B. Smith, and Eric Alm -- Advancing our understanding of the human microbiome using QIIME / José A. Navas-Molina, Juan M. Peralta-Sánchez, Antonio González, Paul J. McMurdie, Yoshiki Vázquez-Baeza, Zhenjiang Xu, Luke K. Ursell, Christian Lauber, Hongwei Zhou, Se Jin Song, James Huntley, Gail L. Ackermann, Donna Berg-Lyons, Susan Holmes, J. Gregory Caporaso, and Rob Knight -- Disentangling associated genomes / Daniel B. Sloan, Gordon M. Bennett, Philipp Engel, David Williams, and Howard Ochman -- Microbial community analysis using MEGAN / Daniel H. Huson and Nico Weber -- A metagenomics portal for a democratized sequencing world / Andreas Wilke, Elizabeth M. Glass, Daniela Bartels, Jared Bischof, Daniel Braithwaite, Mark D'Souza, Wolfgang Gerlach, Travis Harrison, Kevin Keegan, Hunter Matthews, Renzo Kottmann, Tobias Paczian, Wei Tang, William L. Trimble, Pelin Yilmaz, Jared Wilkening, Narayan Desai, and Folker Meyer -- A user's guide to quantitative and comparative analysis of metagenomic datasets / Chengwei Luo, Luis M. Rodriguez-R, and Konstantinos T. Konstantinidis
Includes bibliographical references and indexes.
Keywords: Metagenomics -- Methods; Proteomics -- Methods; Gene expression profiling -- Methods; Sequence analysis -- Methods; Electronic books